Seq-Scope Resources



Cho CS, Xi J, Si Y, Park SR, Hsu JE, Kim M, Jun G, Kang HM, Lee JH. Microscopic examination of spatial transcriptome using Seq-Scope. Cell. 2021 Jun 24;184(13):3559-3572.e22. doi: 10.1016/j.cell.2021.05.010. Epub 2021 Jun 10. PubMed PMID: 34115981; PubMed Central PMCID: PMC8238917.

Method Resources

[NEW] Software Package for Processing Seq-Scope and Other Spatial Transcriptome Data (

Step-by-step Experimental Protocols (Version M1.0.0)

Video Demonstration of Key Procedures (

Custom Codes Initially used for Seq-Scope Analysis (

Initial Datasets

Seq-Scope liver and colon raw sequencing data and digital gene expression (DGE) matrix

Seq-Scope liver and colon processed datasets (annotated RDS) and H&E images