Seq-Scope

Seq-Scope Resources

Publications

Cho CS, Xi J, Si Y, Park SR, Hsu JE, Kim M, Jun G, Kang HM, Lee JH. Microscopic examination of spatial transcriptome using Seq-Scope. Cell. 2021 Jun 24;184(13):3559-3572.e22. doi: 10.1016/j.cell.2021.05.010. Epub 2021 Jun 10. PubMed PMID: 34115981; PubMed Central PMCID: PMC8238917.

Method Resources

Custom Codes used for Seq-Scope (https://github.com/leeju-umich/Cho_Xi_Seqscope)

Video Demonstration of Key Procedures (https://www.youtube.com/playlist?list=PLRwwF9JZ_f5P7wXjgt90o52Jz9JyMYWf4)

Step-by-step Experimental Protocols (Version M1.0.0)

Software Package for Processing Seq-Scope Data (Coming Soon)

Initial Datasets

Seq-Scope liver and colon raw sequencing data and digital gene expression (DGE) matrix
(https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE169706)

Seq-Scope liver and colon processed datasets (annotated RDS) and H&E images
(https://doi.org/10.7302/cjfe-wa35)