Data

Web Tools for Exploring Our Single Cell RNA-seq Data

Data associated with Park et al. Transcriptome landscape of DNA-damage response at single-cell resolution.

*** For gene names, please type the official gene symbol approved by the HUGO Gene Nomenclature Committee (e.g. CDKN1A, MDM2).

RShiny tools for exploring scRNA-seq dataset on RKO cells treated with different doses of 5FU.

(1) 2-dimensional analyses (t-SNE, UMAP & individual gene expression) on scaled data & magic-imputed data

http://shiny.sph.umich.edu/hmkang/RSH/RKO2D

(2) Analysis of single cell gene expression across different subgroups of cells partitioned with 5FU dose and group identity, expressed as mean±SEM. [Coming Soon]

http://shiny.sph.umich.edu/hmkang/RSH/RKOgraph

RShiny tools for exploring scRNA-seq dataset on HCT116 cells treated with different doses of 5FU.

(3) 2-dimensional analyses (t-SNE and UMAP) on scaled data

http://shiny.sph.umich.edu/hmkang/RSH/HCT1162D

(4) Analysis of single cell gene expression across different subgroups of cells partitioned with 5FU dose and group identity, expressed as mean±SEM.

http://shiny.sph.umich.edu/hmkang/RSH/HCT116graph

RShiny tools for exploring scRNA-seq dataset on SW480 cells treated with different doses of 5FU.

(5) 2-dimensional analyses (t-SNE and UMAP) on scaled data

http://shiny.sph.umich.edu/hmkang/RSH/SW4802D

(6) Analysis of single cell gene expression across entire population treated with different 5FU dose, expressed as mean±SEM.

http://shiny.sph.umich.edu/hmkang/RSH/SW480graph/